PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000069.1_g00023.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 517aa    MW: 55940.5 Da    PI: 8.2971
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000069.1_g00023.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.5e-0584106123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C++C+k F r  nL+ H r H
  Itr_sc000069.1_g00023.1  84 FVCEICNKGFQRDQNLQLHRRGH 106
                              89*******************88 PP

2zf-C2H212.70.00038160182123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              +kC +C+k++  +s+ k H +t+
  Itr_sc000069.1_g00023.1 160 WKCDKCSKRYAVQSDWKAHSKTC 182
                              58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-583106IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.78E-783106No hitNo description
PROSITE profilePS5015710.94984106IPR007087Zinc finger, C2H2
PfamPF121718.3E-584106IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.01784106IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
SMARTSM00355220125155IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.5E-4148181IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.78E-7155180No hitNo description
SMARTSM00355140160180IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MMMKGLVIQH PHSALDQENM SNLTSASGEA SVSDTNGGIY PQQQQQQVFG SQPVKKKRNQ  60
PGNPDPDAEV IALSPKTLMA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLKQRSNKEV  120
RKKVYVCPEP SCVHHEPSRA LGDLTGIKKH FCRKHGEKKW KCDKCSKRYA VQSDWKAHSK  180
TCGTREYRCD CGTLFSRRDS FITHRAFCDA LAEESARRVM TGSQIHPSQP GCSSASNINL  240
QFPAFQAFPP PQIGGHGDNS PSPAFPSVKK EQQHYNGGGG GGFNLRPEIP PWLITCQPLV  300
GATHGPPPPL FHPGGLDFHH EFTQMAQNPN PNLGGGPTLP PFHQTASSPQ ISATALLQKA  360
AQMGATGIGS GTASSVAPPM LMIGAHSAHV SADQANNLSS RDTARDDVIS DNNGLPIKSS  420
AAAPPPHGGA FLHDITAAAT SFSSSTTDPH GFDASSFEDP FGGIGGANDD MTKDFLGLRP  480
LSHSDIFNIT SLVDNPASDH HHHHHHHQPQ VQKAWPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110122KLKQRSNKEVRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016479409.10.0PREDICTED: protein indeterminate-domain 7-like
RefseqXP_016479410.10.0PREDICTED: protein indeterminate-domain 7-like
SwissprotQ8H1F51e-124IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A068TNU11e-177A0A068TNU1_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000063851e-174(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-118indeterminate(ID)-domain 7